{"id":3017,"date":"2017-11-20T10:59:54","date_gmt":"2017-11-20T10:59:54","guid":{"rendered":"http:\/\/touchoncology.com\/cytogenetic-inflammatory-immunologic-and-infectious-basis-for-dysplastic-hematopoeisis\/"},"modified":"2019-03-05T14:40:22","modified_gmt":"2019-03-05T14:40:22","slug":"cytogenetic-inflammatory-immunologic-and-infectious-basis-for-dysplastic-hematopoeisis","status":"publish","type":"post","link":"https:\/\/touchoncology.com\/haematology\/journal-articles\/cytogenetic-inflammatory-immunologic-and-infectious-basis-for-dysplastic-hematopoeisis\/","title":{"rendered":"Cytogenetic, Inflammatory, Immunologic, and Infectious Basis for Dysplastic Hematopoeisis"},"content":{"rendered":"
Myelodysplastic syndrome (MDS) is a cytogenetic, epigenetic, and immunological heterogeneous group of myeloid disorders characterized by dysplastic hematopoeisis and propensity for acute myelogenous leukemia (AML) transformation.1,2<\/span> The Surveillance, Epidemiology, and End Results (SEER) Program estimates that risk factors for the disease include, among others, aging,3<\/span> which is frequently associated with myeloid skewed hematopoeisis,4<\/span> male gender, and less characterized, smoking exposure.5<\/span> The revised international prognostic score system (R-IPSS) segregates five subgroups with distinct biologic behavior; however, low risk (very low and low) and high risk (intermediate, high, and very high) categories allow risk stratification for therapy selection.6<\/span> For patients with low-risk disease, gene expression profiling (GEP) highlights defects leading to immune deregulation, and enhanced apoptosis.7<\/span> On the other hand, patients with high risk disease exhibit GEP associated with checkpoint abnormalities and core oncogene activation, such as MYC<\/span>.8,9<\/span><\/p>\n The World Health Organization (WHO) classification of myeloid disorders allocates disease subgroups that integrate MDS with either multilineage dysplasia (MDS-MLD), MDS single lineage dysplasia (MDS-SLD), MDS with single lineage dysplasia and ring sideroblasts (MDS-RSSLD), MDS with multilineage dysplasia and ring sideroblasts (MDS-RSMLD), MDS with excess blasts-1 (MDS-EB1), and MDS with excess blasts-2 (MDS-EB2).10<\/span> About 70% of MDS patients would present with anemia, however, quantitative and qualitative defects in granulocytes are commonly observed. Neutrophils play an important role in innate defense mechanisms against bacterial infection. Several previous reports highlight not only an increasing incidence but also significant severity of infection in patients with MDS.11<\/span> It is likely that similar defects that initiate dysplastic erythropoiesis originate functional neutrophil abnormalities. In addition, MDS can present with thrombocytopenia, and even functional platelet abnormalities.12,13<\/span> Trilineage quantitative defects emphasize the possibility of multiprogenitor stem cell as initiating event. However, full characterization of MDS stem cell\/progenitor has been limited by inability to accurately engraft and propagate human disease in xenograft model. This suggests that the bone marrow microenvironment facilitates initiation and maintenance of the disease. To date, MDS remains enigmatic. It is likely that as novel genomic diagnostic techniques develop, further characterization of MDS-initiating events will improve design and delivery of precision therapy. In this article, we will review the current molecular, inflammatory, and infectious basis for dysplastic hematopoietic failure. <\/p>\n Normal hematopoiesis <\/p>\n Normal hematopoeisis is a stepwise process that leads to generation of functional red cells, platelets, and granulocytes. Hemopoeitic stem cells (HSCs) proceed through multiple divisions to ensure lifelong provision of differentiated myeloid-lymphoid progenitor (MLP) equipped with potential for stable propagation of self-differentiation programs (see Figure 1<\/span>). For human blood hierarchy, xenotransplantation has provided significant progress in understanding normal and malignant hematopoiesis.14,15<\/span> However, given the small number of HSC (1 x 106 cells), study of stem cell biology has been challenging. These cells reside as dormant fractions (G0) in marrow niches. Initial experiments involved injection of human bone marrow cells into immune-deficient sublethally irradiated mice. Myeloid repopulation was favored by addition of interleukin-3 (IL-3), granulocytic-macrophage-colony stimulating factor (GM-CSF), and stroma cell factor (SCF).16,17<\/span> The potential for long-term repopulation (more than 12 weeks) and transient engraftment suggested two subgroups defined as long-term HSC (LT-HSCs) and short-term HCS (ST-HCSs).18<\/span> A well-defined C34+ cell is endowed with self-renewal capacity and potential for long-term marrow repopulation.18 <\/span>HSC division would be expected to result in either cells retaining stem cell program, or changes in GEP consistent with cell differentiation and progressive loss of CD34 expression. Generally speaking, human lineage commitment generates lymphoid subsets including T, B, and natural killer (NK) cells equipped for pre-specified immune response. In addition, fully developed granulocytes such as neutronphils, eosinophils, mast cells, basophils, and monocytes differentiate from granulocytic-monocytic progenitor (GMP) (see Figure 1<\/span>), whereas erythrocytes and megakaryocytes arise from progenitors with megakaryocyte and erythroid cell potential. Precursors\/progenitor terminal differentiation is supported by highly complex interaction between transcription factors, cytokines, and niches structure. Among them, a well-known homeostatic granulocyte-colony-stimulating factor (G-CSF) facilitates granulocytic differentiation. On the other hand, during malignant transformation, myeloid biased progenitor expansion represents a priming event. In addition, adult stem cells\/progenitors interface with marrow niche, which also participate in HSC malignant transformation. <\/p>\n Dysplastic hematopoeisis <\/p>\n The observation that dysplastic myeloid features are retained in different maturation stages in MDS patients suggests a potential hierarchical model for dysplastic hematopoeisis (see Figure 2<\/span>). Despite difficulties for recapitulating MDS disease in animal xenograft, previous models have demonstrated that coinjection of CD34+ hemopoeitic cells, along with in vitro <\/span>expanded mesenchymal stromal cells (MSCs) into marrow cavity, faithfully reconstitute human MDS cells. \u201cDisease propagating cells\u201d were restricted to CD34+ CD38- fractions suggesting that disease could occur, at least in a proportion of patients, in multipotent stem cells.19<\/span> Supporting this, non-leukemic cell populations, such as lymphocytes obtained from DNMT3Amut AML patients in remission (3 out of 14 patients [21.4%]), harbored similar mutations found in leukemic cells. This mutation were observed at lower allele frequencies (4\u201331%),20<\/span> suggesting a multipotent stem cell disease initiating effect.21<\/span> These mutations, originated in the HSC compartment, can clonally expand and progress as preleukemic fractions, contribute to acute AML, an evolving concept that highlights a hierarchical model for MDS. <\/p>\n Aging bone marrow<\/p>\n The physiology of aging hematopoiesis represents an attractive research field given complex interaction between bone marrow microenvironment and HSC. During aging, a gradual functional decline of diverse cellular subsets with different self-renewal and differentiation potential is dominant. However, it is recognized that a shift towards preferential myeloid biased hematopoeisis is a common event that precedes disruption of normal marrow homeostasis.22<\/span> Among others, low transforming growth factor (TGF)-\u03b2<\/span> bone marrow concentration provides signaling to induce myeloid biased hematopoiesis.17<\/span> In aging HSC, TGF-\u03b2<\/span> regulated genes, such as Nr4a1, Cepba, Jun, and Junb were found to be down-regulated suggesting that TGF-\u03b2<\/span> participates in HSC development.22<\/span> Under preferential myeloid hematopoeisis, several other factors contribute to progressive loss of regenerative marrow potential including deregulation in inflammation. Serum levels of circulating proinflammatory cytokines, such as IL-6 and tumor necrosis factor (TNF-\u03b1<\/span>) are typically elevated twofold to fourfold in the elderly, leading to an entity collectively described as inflamm-aging.23<\/span> High levels of IL-6 and TNF-\u03b1<\/span> lead to defective mesenchymal stem cell differentiation, impaired osteoblastogenesis, and exacerbates myelopoiesis.23<\/span> In addition, aging greatly increases the risk of accumulating harmful mutations in a myeloid skewed context favoring high incidence hematologic malignancies, a term defined as clonal hematopoiesis of indeterminate potential (CHIP).24<\/span> Contrasting this, in otherwise healthy old adults even with detectable mutations, such as DNMT3A, phenotypically normal trilineage reconstitution could be sustained for years without excessive risk for hematologic malignancies.25<\/span> In this context of \u201casymptomatic mutational carriers\u201d, patient-associated genetic, epigenetic, and immunologic defects could govern vulnerability for hematologic malignancies. <\/p>\n Cytogenetics abnormalities <\/p>\n Chromosome 5q deletions <\/p>\n Chromosome 5q deletion (del[5q]) is one of the most studied phenotypic expressions of MDS. This distinctive 5q syndrome is characterized by macrocytic anemia, a normal or increased platelet count, erythroid hypoplasia with micromegakarocytes in bone marrow.18\u201321<\/span> Isolated del(5q) can occur in about 10\u201315% of patients representing the most common isolated cytogenetic abnormality.26<\/span> It clusters within the good cytogenetic group and is associated with improved overall survival (OS) and AML-free survival of 57.8 and 202 months, respectively.27<\/span> The most commonly reported deletions fall into one of the following three types of common deleted region (CDR): del(5)(q13q31), del(5)(q13q33), and del(5)(q22q35).18\u201323<\/span> The first CDR 5q32-5q33 is associated with the del(5q) syndrome and better prognosis. Within this CDR are SPARC<\/span> gene and RPS14, a component of the 40S ribosomal subunit whose allelic haploinsuficiency recapitulates phenotypic expression of del(5q) syndrome in vitro<\/span>.28,29<\/span> The second and more proximal CDR located at 5q31 includes candidate genes CDC25c<\/span>, EGR1<\/span>, and alpha catenin (CTNNA1<\/span>), a putative tumor suppressor gene. Deletion of this locus is associated with a complex karyotype, p53 mutation, and more aggressive disease. Outside of the CDRs, several genes including numerous cytokine genes such as APC, NPM1, IL-3, 4, 5, 9, 13, 17\u03b2<\/span>, and GM-CSF are located on 5q.28,30<\/span> del(5q) MDS has unique sensitivity to lenalidomide. Mechanistically, lenalidomide inhibits two dual-specificity phosphatases, Cdc25C and PP2A-C, involved in G2\/M checkpoint regulation.31<\/span> It also induces cellular apoptosis via the p53 pathway by binding to the CRLA4CRBN E3 ubiquitin ligase, altering its substrate affinity to induce the selective degradation of casein kinase 1A1 (CK1\u03b1<\/span>), a known down-regulator of p53, below haploinsufficiency level29,32<\/span> and up regulating SPARC.30<\/span><\/p>\n Chromosome 7 aberrations <\/p>\n Chromosome 7 aberrations are the second most common distinct chromosomal abnormality in MDS with an overall frequency of 25\u201330%.31<\/span> Entire loss (monosomy 7), partial deletions of the long arm (del[7q]), and translocations have been described.33 Identified CDR includes the band 7q22 and the more telomeric regions 7q31\u201332 and 7q36. At the genomic level, inactivating mutations in EZH2 play an important pathogenic mechanism in establishing disease phenotype.34<\/span> Generally, chromosome 7 aberrations are associated with more severe cytopenias, and an overall poor prognosis. Del(7q) clusters into the intermediate prognostic group, and monosomy 7 into the poor group.31<\/span> Some authors supported this prognostication32,33<\/span> while others suggested no prognostic difference between del(7q) and monosomy 7.35<\/span> At the therapeutic level, small reports of treatment with hypomethylating agents (HMAs), such as azacitidine and decitabine, are encouraging with preferentially good response in monosomy 7 patients,36<\/span> but require larger scale validation.<\/p>\n Chromosome 17 abnormalities <\/p>\n Del(17p) has been primarily observed in therapy related AML and MDS. Overall incidence in MDS is about 0.2\u20133.7%.27,37<\/span> Deletion involving the short arm of chromosome 17 is associated with complex karyotype encompassing del(5\/5q) and\/or del(7\/7q).38<\/span> Del(17p13.1) contains TP 53, and its associated disease phenotype is characterized by high-risk biology and enhanced propensity for leukemia transformation.35<\/span> The presence of chromosome 17 abnormalities as part of complex karyotype conferred an even worse prognosis than that predicted by the R-IPSS with a median OS of 5.4 months.39<\/span> Copy number neutral-loss of heterozygosity (CN-LOH) involving 17p was the most common CN-LOH in patients with newly diagnosed MDS and was associated with increased genomic instability and more aggressive disease.40<\/span><\/p>\n Chromosome 3 abnormalities <\/p>\n Inv 3 (q21q26) and t(3:3)(q21q26) have been described in de novo<\/span> or therapy associated MDS and AML. In MDS, these abnormalities represent about 1% of recurrent cytogenetic aberrations.36<\/span> Their particular disease phenotype is characterized by MDS-MLD.41<\/span> Chromosome 3 abnormalities cluster to the poor risk group. At the genomic level, MDS and AML with 3q26 rearrangement have revealed over expression of the proto-oncogene EVI1 (ecotropic viral integration site-1)42<\/span> associated with impaired myeloid differentiation.43<\/span> Up regulation of GATA-2 is also identified, and its overexpression promotes aberrant megakaryopoiesis. Wanquet et al.44<\/span> reported an overall response rate of 50% in patients with chromosome 3 abnormalities treated with 5-azacitidine (5-aza) and median OS of 10.6 months.<\/p>\n Trisomy 8 <\/p>\n Trisomy 8 is the most common chromosomal gain in MDS with an estimated incidence of about 4.2%.27<\/span> Phenotypically, patients present with more than one cytopenia, lower blast percentage, and association with hypoplastic bone marrow features.45\u201347<\/span> Severe cytopenias can result from cellular suppression of normal bystander cells mediated by a deregulated cytokine milieu as result of immune directed cytotoxicity.38,48<\/span> Pellagatti et al.9<\/span> showed that the 10 most significantly deregulated gene pathways in trisomy 8 MDS are associated with the immune response. Trisomy 8 falls into intermediate risk group by Schanz et al. data, with a reported OS of 23.8 months.27<\/span> The Spanish MDS group reported a similar survival between trisomy 8 MDS and normal karyotype MDS for blasts count <5% and a worse outcome for blasts greater than or equal to 5%.47<\/span> Not surprisingly, immunosuppressive therapy (IST) is backbone treatment for trisomy 8 MDS.49<\/span><\/p>\n Chromosome Y <\/p>\n Chromosome Y loss is reported in 2.2% of patients with MDS.22<\/span> This incidence increases significantly in males after 70 years of age and with age in both malignant and pre-malignant conditions. In a subset of patients chromosome Y loss is a clonal event; however in others it is clearly an age related event.50<\/span> Prognostic wise, -Y MDS, along with del(11q) clusters into the very good prognostic group with a median OS of 60.8 months and low risk of AML transformation.22<\/span><\/p>\n Complex karyotype <\/p>\n The overall incidence of MDS with complex karyotype is about 10\u201318%.27,39<\/span> Patients with greater than three cytogenetic abnormalities account for 2.1% and 7%.27<\/span> In the study by Schanz et al., OS was 15.6 months with exactly three abnormalities versus 5.7 months for those patients with more than three abnormalities (p\u22640.01).27<\/span> In patients with complex karyotype, the presence of aberrations that included chromosomes 5 and\/or 7 represented a subset with adverse prognosis between all cytogenetic categories.<\/p>\n Monosomal karyotype<\/p>\n Monosomal karyotype (MK) is defined by the presence of at least two autosomal monosomies or a single autosomal monosomy associated with at least one structural abnormality. MK confers inferior outcome in AML. A similar effect was demonstrated for MDS patients presenting with MK. Patnaik et al.40<\/span> evaluated 127 patients with MDS with complex karyotype including 106 with MK, observing significantly inferior survival in the subgroup with MK as compared to those with complex karyotype without monosomies (p=0.01; hazard ratio [HR] 1.9). Additionally, a non-statistically significant trend towards inferior leukemia free survival was demonstrated (p=0.09, HR 2.7). The presence or absence of monosomy 7 and\/or monosomy 5 did not affect survival among patients with MK. Interestingly, the outcome of AML patients with complex karyotype after allogeneic stem cell transplant was not influenced by harboring MK, a finding that requires confirmation in MDS patients.<\/p>\n Mutational analysis <\/p>\n Advances in MDS therapy will derive from molecular precision and identification of potential druggable targets for the disease. In 2005, The Cancer Genome Atlas (TCGA), and during 2008, The International Cancer Genome Consortium (ICGC) were designed as large-scale projects to improve understanding of cancer associated recurrent somatic mutations. In AML, robust prognostic relevant mutations were reported with mutational subgroups frequently observed in MDS suggesting similar ability to detect a significant impact on MDS outcome. Seven subgroups including: activating signaling; DNA methylation; chromatin modifiers; spliceosome, myeloid transcription factors; tumor suppressor genes; and less commonly observed mutations including cohesin complex, BCOR, and BCORL1 (see Figure 3<\/span>). In this section, we will describe frequency, prognostic implication, and functional implication of frequently observed mutation in myelodysplasia.<\/p>\n DNA methyltransferases-3A (DNMT3A) <\/p>\n DNA methyltransferases (DNMTs) promote conversion of cytosine to 5-methylcytosine (5-mC). Particularly, DNMT3A is active in different biological developmental functions and actively participates in gene expression processes. Enzymatic conditional ablation results in increased self-renewal of HSCs rather than normal differentiation.51<\/span> Evolving recent concepts include dominant negative effect in murine embryonic stem (ES) cells, which highlights not only potential for mutated protein to deactivate wild-type enzyme inhibiting methylation, but also reflects a pivotal physiological role in mechanisms of gene expression.52<\/span> Somatic DNMT3A mutations have been observed in hematopoietic malignancies with an incidence of 22% in de novo AML.53<\/span> OS and event-free survival (EFS) have shown to be inferior in patients harboring the mutation.54<\/span> However, in elderly patients with mutated DNMT3A<\/span> AML, epigenetic treatment was associated with an OS of 15.2 months versus 11.0 months for patients with DNMT3A wild-type.55<\/span> As seen in AML, DNMT3A mutation represents an early or founding event in patients diagnosed with MDS. Indeed, mutational frequency of 13% is reported. Previous reports suggest a relationship between DNMT3A defects and an increase in the risk for leukemia progression.56<\/span> HMAs are frequently administered in patients with MDS. HMAs are thought to induce inhibition of DNMT1, which improves methylation levels allowing gene re-expression and subsequent differentiation.57<\/span> Traina et al. recently described that patients harboring DNMT3A,TET-2, and IDH1 mutations exhibited superior HMA response than similar patients without evidence for the mutations (overall response rate [ORR] for patients with two versus one versus lack of mutations were 75%, 25%, and 20%, respectively).58<\/span><\/p>\n Ten Eleven Translocation-2 (TET-2)<\/p>\n The overall incidence for TET-2 <\/span>mutations in MDS is about 30%.59<\/span> Similarly, TET-2<\/span> mutations are observed in myeloproliferative neoplasm (MPN) and chronic myelomonocytic leukemia (CMML) in about 10 and 60%, respectively, making this the most frequently mutated gene in hematologic malignancies.60<\/span> The biological consequence of TET-2<\/span> mutations involves defective conversion of 5-methylcytosine (5mC) to 5-hydroxymethylcytosine (5hmC). In a normal biologic state TET-2 requires \u03b1<\/span>-ketoglutarate (KG)-Fe(II) and O2<\/span> for dioxygenase enzymatic activity in order to mediate 5mC hydroxylation. In addition, TET-2 is involved in chromatin modification through interaction with O-linked b-N-acetylglucosamine transferase (OGT) enhancing the catalytic activity of this enzyme while targeting gene promoters.56<\/span> It is possible that TET-2 <\/span>affects epigenetic modulation of gene expression inhibiting passive demethylation by excluding maintenance DNAMTs.62<\/span> Passive demethylation facilitates gene expression in the functional TET-2 state but represses it upon loss of function. TET-2<\/span> and IDH1\/2<\/span> mutations are mutually exclusive. Given \u03b1<\/span>-KG requirement, TET-2 loss of function is normally observed in patients harboring IDH1\/2<\/span> mutations, in which 2-hydroxyglutarate (2HG) accumulation resulting from isocitrate dehydrogenase (IDH) neomorphic activity, leads to TET-2 inhibition.63<\/span> Recently, Traina et al. evaluated 230 patients with MDS, MDS\/MPN, or secondary AML (sAML). In the study 92 patients including 53 with MDS, 28 with MDS\/MPN, and 11 with sAML were treated with epigenetic therapy. Among them, 17 patients (18%) were TET-2-mutated and showed better azanucleoside response. However, there was no effect from epigenetic therapy on OS and PFS of TET-2-mutated patients.58<\/span><\/p>\n Isocitrate dehydrogenase (IDH)1 and IDH2<\/p>\n IDH is a key and rate-limiting NADP+ enzyme for the tricarboxylic acid (TCA) cycle that catalyzes the oxidative decarboxylation of isocitrate to \u03b1<\/span>-KG (2-oxoglutarate). IDH1<\/span> and IDH2<\/span> mutations are observed in MDS with an incidence of about 5%, and is also observed in other hematologic malignancies like AML in about 15\u201330% of cases.64<\/span> IDH<\/span> mutations lead to substitution of \u03b1<\/span>-keto by hydroxyl group, in \u03b1<\/span>-KG, converting this metabolite to 2HG, an oncometabolite that competes with \u03b1<\/span>-KG. 2HG interferes with the function of all dioxygenases, such as TET-2.45<\/span> IDH<\/span> mutations can also induce downregulation of the ATM<\/span> gene by inducing histone methylation,46<\/span> resulting in impaired non-homologous end joining repair and thus increasing DNA damage. Both IDH1<\/span> and IDH2<\/span> have similar incidence in MDS and are thought to be disease initiating mutations. They participate in disease development rather than progression. The prognostic impact for IDH1<\/span> mutations has been recently evaluated in a study of 1,782 patients diagnosed with MDS demonstrating that mIDH1<\/span> was associated with inferior survival.47<\/span> Other smaller studies have demonstrated that mIDH2<\/span> decreases overall survival in patients diagnosed with MDS (median, 18.5 versus 31.3 months, p=0.039).58<\/span> A growing interest has developed for inhibition of mutated enzyme given leukemogenic transforming potential for 2HG accumulation. The IDH2 inhibitor, AG-221, is one of the current agents used to treat mIDH<\/span> AML and MDS patients. In a phase I trial for treatment of relapsed\/refractory IDH2-mutated AML and MDS patients, the drug has shown promising ORR of 62.5% (complete response [CR] 37.5%). Other agents in development include IDH1 inhibitor AG-120, IDH2-R140Q inhibitor AGI-6780, and IDH1 inhibitor HMS-101.49<\/span> In addition, AG-881 represents recent pharmacologic design for dual IDH1 and IDH2 inhibition. This agent is being evaluated in phase I trial and retains blood brain barrier penetration, making the compound attractive for IDH<\/span> mutated AML complicated with central nervous system (CNS) involvement.49<\/span> <\/p>\n Enhancer of zeste homolog 2 (EZH2)<\/p>\n Enhancer of zeste homolog 2 (EZH2) is part of the polycomb-group (PcG) and catalytic component of polycomb repressive complex 2 (PRC2), which participates in the regulation of gene expression through DNA methylation and transcriptional repression. This regulatory function of the EZH2 is carried out by introducing a methyl group from the cofactor S-adenosyl-L-methionine (SAM) into histone 3 (H3K27) inducing histone trimethylation.50,66<\/span> EZH2 has an important role embryologic development driving X-inactivation, differentiation of lymphocytic cells, and maintaining normal hematopoiesis. Gene mutations resulting in EZH2 overexpression are observed in several cancers, such as prostate and breast. Contrary to this phenomenon, underexpression of EZH2 is a common finding in hematologic malignancies such as MDS playing an important role in disease pathogenesis, especially in patients with deletions of chromosome 7.67<\/span> The mutation is normally associated with significantly inferior OS (62 versus 36 months for wild-type versus mutated patients, p=0.033). Overall, mutational frequency is about 10% and is commonly observed in patients exhibiting complex karyotype.67,68<\/span> In addition to poor impact on high-risk disease, Bejar et al. found that EZH2<\/span> mutations could also be observed in patients with low-risk disease biology resulting in adverse clinical impact. Targeted therapy directed to inhibit EZH2 overexpression and resultant H3K27 hypermethylation has shown to be a potential treatment option not only in hematologic malignancies but also in gliomas and breast cancer. A specific EZH2 inhibitor, GSK-126, has been shown to be active in EZH2<\/span>-mutated lymphomas, for which activating EZH2<\/span> mutations are described.69<\/span> However, for this compound, lack of effect is expected in EZH2<\/span>-mutated MDS\/AML, for which mutations are loss of enzymatic function. <\/p>\n ASXL1<\/p>\n ASXL1 is a member of the PcG of proteins that maintains close interaction calypso ortholog BAP1, a deubiquitinating enzyme associated with histone modification and gene repression. However, the specific mechanisms by which ASXL1<\/span> mutations participate in hematologic malignancies initiation are not fully understood. Conditional ES cell gene deletion leads to multilineage cytopenias and dysplasia, normally seen in patients with MDS.70<\/span> Most of the mutations are heterozygous,71<\/span> retaining potential for induction of significant myeloid dysplastic changes, such as pseudo-Pelger huet abnormalities, hypo and hypersegmented neutrophils, and increased evidence of hypogranulated and apoptotic neutrophils.72<\/span> Previously, studies have demonstrated that ASXL1<\/span> mutation occurs in about 21% of patients diagnosed with MDS.71<\/span> Mutations were primarily found in patients with normal karyotype and del(7q\/monosomy 7).73<\/span> In addition, ASXL1<\/span> gene plays an essential role in granulomonocytic development and higher mutation frequencies are observed in CMML than in MDS. In CMML, ASXL1 <\/span>mutation independently conferred an inferior OS (HR 2.29, p\u22640.001).70<\/span> The prognostic interaction between ASXL1<\/span> and TET-2<\/span> was studied by Patnaik et al, demonstrating that the combination of ASXL1<\/span> mutation and wild-type TET-2<\/span> gene resulted in inferior survival.74<\/span> On the other hand, patients with ASXL1 wild-type\/TET-mut exhibited superior survival. In a separate analysis, ASXL1<\/span> mutation conferred inferior OS when compared to those patients with wild-type ASXL1 (HR 1.74; 95% confidence interval [CI], 1.08\u20132.82; p=0.024). Importantly, this association was usually restricted to nonsense and frameshift mutations and led to shorter progression time to AML.75<\/span><\/p>\n Runt-related transcription factor 1 (RUNX1) <\/p>\n Runt-related transcription factor 1 (RUNX1) also known as AML 1 protein (AML1) is a regulator that plays an important role in the differentiation of lower hematopoietic hierarchies into mature blood cells. The gene is located on chromosome 21 and has a Runt domain, which is a protein motif responsible for DNA binding as a monomer and heterodimerization with core-binding factor \u03b2<\/span> to enhance DNA binding capacity by 10-fold.76<\/span> At the genomic level, RUNX1 regulates growth factor genes such as GM-CSF, myeloperoxidase (MPO), and IL-3. Mutations in the RUNX1<\/span> gene are highly associated with poor differentiated AML and MDS with a frequency of (23.6%). Point mutations in the RUNX1<\/span> gene can be acquired from exposure to radiation or drug-related insults and have a frequency of (42%) in cases of therapy-related MDS and AML, although they have not been associated with an impact on prognosis or therapy sensitivity.73<\/span> Chromosomal translocations are also a potential cause of RUNX1 disruption involving transposition with the ETO<\/span> gene located on chromosome 8q22. t(8;21) translocation generates AML\/ETO fusion protein responsible for blast cell self-renewal and their massive accumulation in bone marrow.73<\/span> Along with TP53<\/span>, EZH2<\/span>, ETV6<\/span>, and ASXL1<\/span>, RUNX1<\/span> predicted poor outcome in patients with MDS, independently from prognostic risk factors. Another important characteristic of a mutated RUNX1<\/span> gene is the role in the progression of MDS to sAML, especially when present at early MDS stage and cooperating events such as FLT3-ITD<\/span> or MLL-PTD<\/span>.77<\/span><\/p>\n TP53<\/p>\n TP53<\/span> gene is located on the short arm of chromosome 17 and encodes for p53, a tumor suppressor protein that activates upon DNA damage. This protein also known as tumor suppresor p53 binds directly to DNA and regulates DNA repair, apoptosis, and cell cycle progression at G1\/S regulation point. TP53 interacts with other regulators and genes such as BRCA1<\/span> and BRCA2<\/span>, cyclin dependent protein complexes, and KRAS, among others, making this gene an important target for hematologic and solid malignancies. TP53<\/span> mutations are present in 50% of malignancies, and both loss and gain of function have been related to tumorigenesis.78<\/span> Mutations of TP53<\/span> are seen in multiple hematologic malignancies with a frequency in acute lymphocytic leukemia (ALL), AML, chronic lymphocytic leukemia (CLL), and MDS of 16%, 12%, 7%, and 6%, respectively.78<\/span> TP53<\/span> mutations are observed in MDS patients harboring 5q deletion and complex karyotype, which is associated with inferior OS and increased risk of AML conversion.79<\/span> The prognostic implication for the mutation has been widely reported,79,80<\/span> with studies revealing a 5 years cumulative incidence of leukemia development of 77% versus 24%, for mutated versus unmutated TP53.79<\/span> Although TP53<\/span> mutations are not as frequent in MDS as in other hematologic malignancies, studies have shown that the mutation can be a potential predictor of response to therapy. This was seen in a trial of decitabine reported by Welch et al., demonstrating that in 116 patients, 53 patients (46%) had bone marrow blast clearance (<5% blasts) and response rates were higher among those with unfavorable-risk cytogenetic profile than those with an intermediate-risk or favorable-risk cytogenetic (29 of 43 patients [67%] versus 24 of 71 patients [34%], p<0.001).81<\/span> Interestingly, among patients with TP53<\/span> mutations, higher responses were observed when compared wild-type TP53 (21 of 21 [100%] versus 32 of 78 [41%], p<0.001).80<\/span> Similar findings are also reported by Chang et al.82<\/span><\/p>\n Spliceosome mutations <\/p>\n Splicing is a strictly regulated event carried out by spliceosomes that generate protein diversity in cells by removing introns for pre-mRNA to create multiple mature m-RNA from one gene.83<\/span> Half of the bone marrow samples from patients with MDS harbor spliceosome mutations. These are considered to be founding mutations that give a selective growth advantage to HSC. Most frequent mutations occur in SF3B1, U2AF1, SRSF2, and ZRSR2. Importantly, all mutations are mutually exclusive with each other, suggesting that the same cell cannot harbor two spliceosome mutations at once.84<\/span> Among them, SF3B1<\/span> is the first gene associated with specific morphological features of MDS, such as refractory anemia ring sideroblast (RARS).85,86<\/span> SF3B1<\/span> mutant disease presents with high platelet count, MDS-RSSLD with \u226515% RS in 82.6% patients.85<\/span> The phenotypic expression for the disease is normally associated with favorable outcome. However, iron deposition resulting from SF3B1 mutations retains coarse distribution compared to wild-type RARS. At the molecular level, investigation of SF3B1 mutation has provided understanding associated with disruption of splicing factors on stem cell biology. Point mutations result in cell cycle arrest and poor HSC differentiation. Similarly, SRSF2 is a serine-arginine rich splicing factor that has also been recently found to be frequently mutated in 10\u201315% and 25\u201330% of MDS and CMML patients, respectively. This mutation is normally associated with poor survival.87<\/span> The mutation\u2019s pathogenic mechanism in MDS is not yet fully understood. However, some studies suggest that SRSF2<\/span> mutation can lead to increased apoptosis of HSC, alternate splicing of genes, such as CDC25c, and genomic instability.88<\/span> U2AF1 is also a serine-rich small auxiliary factor in the splicing machinery of pre-mRNA that interacts with serine-arginine splice factors such as SRSF2. As a spliceosome mutation, it typically occurs in founding clones and has a frequency of 11% in MDS. In the case of U2AF1<\/span>, the most common mutation is seen on serine codon 34 (Ser34), and it\u2019s not only associated with de novo MDS but also higher risk for sAML.89<\/span> Many splicing inhibitors or modulators have been identified. However, it was not until 2016 when the US Food and Drug Administration (FDA) approved H3B-8800, an oral available SF3B1 modulator, for the first human study of spliceosome inhibitors in MDS. This agent is currently in clinical evaluation for MDS, AML, and CMML and has demonstrated to have a selective effect on mutant myeloid cells. 90<\/span><\/p>\n Cohesin complex mutations<\/p>\n Cohesin is a protein complex that has a role in many important processes such as chromosome segregation assisting proper chromatid cohesion, organization of genomic architecture, transcription, and gene expression regulation.91<\/span> Although the role for cohesin complex in the pathogenesis of hematologic malignancies is not fully understood, this protein is known to be essential for cell division, creating a ring-like structure around sister chromatids, so that proper mitosis can occur.92<\/span> The genes that fit in this specific complex are STAG1<\/span>, STAG2<\/span>, SMC1A<\/span>, SMC3<\/span>, and RAD21<\/span>, with STAG1<\/span> being the most frequently mutated gene. Mutations have been connected with multiple myeloid malignancies, including AML, MDS, and MPNs, with somatic mutations found in 12% of patients and decreased expression in 15%.92<\/span> Furthermore, when analyzing the relationship between cohesin mutations and MDS specifically, a cohort study including 1,060 patients MDS (n=386), MPNs (n=55), MDS\/MPNs (n=169), and AML (n=450) identified cohesin defects in 11% of low-risk MDS and 17% in high risk MDS patients. Interestingly, STAG2<\/span> mutations associated with higher-risk disease (p=0.0023).93<\/span> In addition, cohesin defects have been found to represent early events in the pathogenesis of myeloid malignancies, and demonstrate a mutually exclusive phenomenon suggesting that dysregulation of one gene may impact the proper functioning of the entire complex. Cohesin complex defects have been found to have no impact on OS, relapse-free survival (RFS), and CR in AML as proposed by Thol et al.94<\/span> However, these mutations were found to be associated with poor OS (27.2 versus 40 months; p=0.023), especially for STAG2<\/span> mutant MDS patients surviving >12 months (median survival 35 versus 50 months; p=0.017).93<\/span> Some therapeutic approaches have been studied involving therapy with lenalidomide and HMAs for at least four cycles demonstrating that patients harboring STAG2<\/span>\/RAD21<\/span> were more likely to respond to HMAs compared with wild-type cases (79% versus 47%; p=0.04). No significant difference in response rate were observed in lenalidomide group (cohesin mutant [50%] versus cohesin wild type [52%] patients).93<\/span><\/p>\n BCOR mutations<\/p>\n The BCOR gene codes for a protein that functions as a BCL-6 corepressor associated with an important role in early mesenchymal stem cell development and hematopoiesis. Mutations in the gene have been described in oculofacico-cardiodental syndrome. It has also been identified as novel fusion partner of retinoid acid receptor \u03b1<\/span> in acute promyelocytic leukemia translocation variants.95<\/span> Protein function is mediated by DNA-binding at promoter regions of proteins such as BCL-6, more specifically at the poxvirus and zinc finger (POZ) domain, and in part by histone deacetylase activity. BCOR mutations are clonal and disruptive events that result in low expression or loss of function of the protein and have increased frequency in oculo-facio-cardio-dental X-linked syndrome, cytogenetic normal (CN)-AML, sAML, and MDS in less proportion.96<\/span> The total frequency of BCOR mutations and other associated proteins such as BCORL-1 in MDS is 4.2%. BCOR defects have been associated with RUNX1 (p=0.002) and DNMT3A mutations (p=0.015). The mutation results in poor MDS prognosis (OS; p=0.013; cumulative incidence of AML transformation: p=0.005).94<\/span> More specifically, the deleterious effect of the mutation has been demonstrate after multivariate analysis including factors such as age, IPSS, transfusion dependency, and mutational status (HR 3.3; 95% CI, 1.4\u20138.1; p=0.008).95<\/span><\/p>\n SETBP1 mutations<\/p>\n SETBP1 is a nuclear protein originally discovered to bind to SET and is activated to facilitate granulopoeisis recovery in chronic granulomatous disease.97<\/span> SETBP1<\/span> mutation has been described in MDS and MDS\/MPN overlap with a frequency of 3.8% and 9.4%, respectively.98<\/span> This mutation is also associated with sAML (17%) and CMML (15%).97<\/span> The gene encoding for the SET binding protein 1 is located on chromosome 18 and is widely distributed in somatic cells.98<\/span> Although it has been described that overexpression of SETBP1 impairs the activity of many tumor suppresor genes such as PP2A, the function of SETBP1 protein is not fully characterized. SETB1<\/span> mutation are observed in 8.9% of CMML patients and results in an additive independent prognostic value to CMML prognostic score system (CPSS) cytogenetic risk groups.99<\/span> SETBP1<\/span> mutations are strongly associated with ASXL1 (p<0.001), which has been postulated to enhance risk for AML transformation in ASXL1-mutated MDS patients. All these features suggest that a SETBP1<\/span> mutation have a substantial role in MDS pathophysiology and represents a novel mechanism for disease progression, especially among patients presenting with higher white blood cell (WBC) and lower platelet counts and hemoglobin levels.<\/p>\n
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